Probiotics:
Everything you need to know to choose the right one
A complete guide to understanding probiotics and choosing the right supplement for your symptoms
Probiotics Explained: what they are and how they work
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Probiotics are live microorganisms (including bacteria and yeast) that, when taken in adequate amounts, provide a health benefit to the host (1). Their primary goal is to boost the amount of “good bacteria” in your digestive tract.
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Each probiotic strain is linked to specific health outcomes (2). This means you can’t simply pick a random probiotic from the pharmacy, it’s important to choose strains that have been shown to be effective for your particular needs.
Understanding the differences between PREbiotics, PRobiotics, POSTbiotics, and SYNbiotics for Gut Health (3)
PREbiotics
→ Prebiotics are complex carbohydrates (fibers) that selectively stimulate the growth and activity of beneficial bacteria in the colon, promoting their growth, while potentially inhibiting the proliferation of pathogenic microorganisms (“bad bacteria”) (3)
SYNbiotics
→ Combinations of live microorganisms (probiotics) and substrates (prebiotics) that are selectively used by host microorganisms, providing a health benefit to the host
POSTbiotics
→ Preparations of inanimate (dead) microorganisms and/or their components that still provide a health benefit to the host.
→ Cell components, metabolites, or secreted compounds that still provide a health benefit to the host
In simple terms:
– A probiotic is a live microorganism that can provide health benefits.
– A prebiotic is the ‘food’ these good bacteria love, helping them grow and thrive in the gut.
– A synbiotic combines both, the live probiotic and its preferred prebiotic, in the same supplement.
– A postbiotic, on the other hand, consists of non-viable (dead) bacteria and/or the bioactive compounds/ metabolites they produce, which can still benefit your health.
Ps: For those here with Irritable Bowel Syndrome
→ Be carelful as some prebiotics can trigger symptoms.
Common examples of PREbiotics are : Inuline, Fructo-oligosaccharides (FOS), xylo-oligosaccharides (XOS), galacto-oligosaccharides (GOS)
Why the Gut Microbiota is key to digestive and overall health
The term ‘microbiota’ refers to the community of living microorganisms that inhabit a specific environment. Here, we focus on the GUT microbiota (4)
The human gut microbiota is made up primarily of bacteria and fungi, but also includes viruses, bacteriophages, and archaea, collectively harboring trillions of microorganisms throughout the digestive tract (4)
In a healthy gut, the microbiota works together with the body to maintain balance. This microbial community plays a key role in digestion, immune function, and overall gut health, and remains relatively stable over time unless disrupted by factors like illness, antibiotics, or major dietary changes (4)
Here are a few examples of the key roles played by the gut microbiota:
Digestive health
Gut bacteria play a key role in digestion by breaking down complex carbohydrates and dietary fibers that your body cannot digest on its own. During this process, they produce short-chain fatty acids (SCFAs), like butyrate, propionate and acetate, (5), which have important health effects ranging from supporting the intestinal barrier to influencing mood and mental health (6)
The gut microbiota is also involved in the synthesis of certain vitamins and assists in breaking down bile produced by the liver, allowing it to be recycled and reused in digestion (5)
Immune system support
The gut houses up to 80% of your body’s immune cells, making it a central player in immune defense (5)
Hormonal and metabolic regulation
The gut microbiota communicates with the brain through the gut–brain axis (and vis-versa), playing an important role in mood, stress management, and cognitive health (5)
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Certain neurotransmitters, including serotonin and dopamine, can be produced directly by gut bacteria or modulated indirectly by microbial activity (6)
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The gut microbiota also affects the hypothalamic-pituitary-adrenal (HPA) axis, influencing cortisol levels and the body’s stress response (6)
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Additionally, gut microbes can impact appetite and energy balance by regulating hunger and satiety hormones such as ghrelin and leptin (6)
This highlights the importance of a healthy gut microbiota and the potential consequences when it becomes imbalanced.
A gut microbiota imbalance, also called “dysbiosis”, refers to a disruption in the normal composition of gut bacteria. This can include a loss or reduction of beneficial microbes, an overgrowth of potentially harmful bacteria, and, overall, a loss of the healthy microbial balance your gut needs to function properly (5)
It’s natural to then wonder whether a probiotic could help restore balance and improve gut health.
So, Should You Take a Probiotic?
First, it’s important to understand that a probiotic is a supplement, which means it is the the “cherry on top,” not the foundation of your gut health strategy. Many other factors have a larger impact on your gut microbiota than a probiotic, including:
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Your diet and nutrient intake
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Physical activity
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Stress levels
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Medications
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Alcohol/drugs consumption
- Etc
The probiotic market is booming, but the actual benefits of probiotic products can vary widely, as can the quantity and viability of the bacteria they contain.
Choosing the Right Probiotic
3 Important Questions to Help You Pick the Best Probiotic

1 - Is there scientific evidence that a probiotic can help with your symptoms ?
Identify probiotics with research-backed potential for your specific symptoms.
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Remember, not all probiotics work for every condition.
Just like you wouldn’t use a headache medicine for a stomach ache, you shouldn’t take a probiotic designed to support immunity if what you actually need is relief from constipation.
You can use the Clinical Guide to Probiotic Products Available in Canada, along with other reliable resources, to help you make an informed decision about probiotics
To use the this particular guide,
→ Choose the appropriate category (adult health, pediatric health) and then review the probiotics relevant to that group.
→ Look at the intended use of the probiotic to make sure it matches what you need it for
→ Pay attention to the strength of evidence for each probiotic. In this guide, the highest level of evidence is indicated with this symbol: “I”🍁 (7)

2 - Look for the probiotic’s full scientific name (genus, species, and strain)
Focus on the specific probiotic strain you need, rather than the brand name.
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The genus, species, and strain together make up the probiotic’s full scientific name (2)
This is how scientists identify the exact type of bacteria and link it to research showing its effects.
For example:
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Lactobacillus (genus)
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reuteri (species)
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DSM 17938 (strain)
A trusted probiotic clearly lists the genus, species, and strain on the label.
Without this information, the supplement might not support your health goals effectively.

3. Ensure your probiotic provides a clinically effective dose
The right dose guarantees that the probiotic delivers its intended effect, this is measured in colony-forming units (CFUs).
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Colony-forming units (CFUs) indicate the quantity of live microbes in each dose, representing the amount of them that will survive stomach acid and reach the intestines to provide health benefits (2)
An effective probiotic typically contains at least 1 to 10 billion CFUs (2), (6),
Note: higher CFU counts don’t always mean better results.
Note:
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Look for a Natural Product Number (NPN): (2)
An NPN indicates that the probiotic supplement has been reviewed under Canadian regulations for quality and safety, and is effective when used as directed.
Products with an NPN must clearly list the product name, quantity, recommended use, dosage, and instructions for ue (11)
To check if your supplement is registered, consult the Government of Canada’s database of licensed natural health products (11)
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Check storage requirements:
Some probiotics need to be refrigerated, while others are stable at room temperature. Always follow the storage instructions to maintain potency and effectiveness.
Examples of some Evidence-Based Probiotics for Specific Symptoms (7)
- Irritable Bowel Syndrome (IBS)
Strains:
B. longum 35624,
L. acidophilus CL1285, L. casei LBC80R, L. rhamnosus CLR2
Brand example:
- Align®
- Bio-K+® IBS Pro
- HMF IBS Relief
- Antibiotic-Associated Diarrhea
- Helicobacter pylori (adjunct therapy
- Traveler’s Diarrhea (TD) Prevention
Strains : Saccharomyces boulardii lyo CNCM I-745
Brand Example: Florastor®
- Constipation
Strains : Lactobacillus reuteri DSM 17938
Brand Example: BioGaia®
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Inflammatory Bowel Disease (IBD), Ulcerative Colitis (adjunct to standard therapy)
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Liver Health (NASH/NAFLD/MHE, adjunct therapy)
Combination of strains;
L. acidophilus DSM24735/SD5212
L. paracasei DSM24733/SD5218
L. delbrueckii subsp. bulgaricus DSM24734/SD5210
L. plantarum DSM24730/SD5209
B. longum DSM24736/SD5220
B. infantis DSM24737/SD5219
B. breve DSM24732/SD5206
S. thermophilus DSM24731/SD5207
Brand Example: Visbiome®
Other conditions where probiotics may be considered include:
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Obesity
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High cholesterol
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Atopic dermatitis
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Depression and anxiety
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Oral health
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Vaginal health
- And others..
Remember:
One size doesn’t fit all when it comes to probiotics. Try a probiotic for at least 6-8 weeks to see if it helps.
If you notice no improvement, you can try a different strain or discontinue use. Always discuss your choices with a dietitian or doctor to ensure it’s safe and appropriate for you.
WHEN to take a probiotic:
When taking antibiotics:
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Most probiotics should be taken 1–2 hours apart from antibiotics to prevent the medication from killing the beneficial bacteria.
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Some probiotic supplements are specifically formulated to be taken alongside antibiotics : check the label.
Examples of strains safe to take with antibiotics: (8)
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Lactobacillus acidophilus Rosell-52
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Lactobacillus rhamnosus Rosell-11
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Bifidobacterium lactis Lafti B94
These strains can be taken at the same time as antibiotic medication, which is not the case for most other probiotic products.
With food ?
Stomach acid tolerance varies between probiotic species and strains.
Some evidence suggests certain probiotics may survive better when taken before a meal, though advanced manufacturing techniques now help protect many probiotics through the stomach.
Always check the product label for specific instructions, as recommendations on timing and usage can vary depending on the formulation (9)
Know the Limits of Probiotics
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Cannot replace a healthy diet – nutrition is still the foundation of gut health.
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Cannot fix all food intolerances – benefits are strain- and symptom-specific.
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Does not permanently recolonize the gut or “repair” damaged intestines.
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Not suitable for everyone – some people may face risks or adverse effects.
Medical Conditions Where Probiotics May Be Contraindicated (10)
Probiotics are safe for most people, but they may not be appropriate in certain medical situations, such as (but not limited to)
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Immunocompromised patients
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People with pancreatitis
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Patients in intensive care (ICU)
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Individuals with melaena (black or tarry stools)
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Patients who have a central venous catheter
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Infants with short bowel syndrome
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Patients recovering from major surgery with open wounds
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Other conditions as well, always check with your healthcare professional if you are unsure.
What now ?
Digestive symptoms can result from various factors. If self-care doesn’t help within 1–2 months, seek guidance from your health care profesionnal.
References:
- National Institutes of Health, Office of Dietary Supplements. (n.d.). Probiotics: Health professional fact sheet. https://ods.od.nih.gov/factsheets/Probiotics-HealthProfessional/
- Dietitians of Canada. (n.d.). Probiotics handout. https://www.pennutrition.com/viewhandout.aspx?Portal=UbY=&id=J8zpXwA=&PreviewHandout=bA==
- World Gastroenterology Organisation. (2023). Probiotics and prebiotics guideline. https://www.worldgastroenterology.org/UserFiles/file/guidelines/probiotics-and-prebiotics-english-2023.pdf
- BMJ. (2018). Probiotics and prebiotics. https://www.bmj.com/content/361/bmj.k2179
- Cleveland Clinic. (n.d.). Gut microbiome: Overview. https://my.clevelandclinic.org/health/body/25201-gut-microbiome
- Thursby, E., & Juge, N. (2017). Introduction to the human gut microbiota. PMC, 5414803 https://pmc.ncbi.nlm.nih.gov/articles/PMC5414803/
- Probiotic Chart. (n.d.). Pediatric health probiotics chart. https://probioticchart.ca/PBCPediatricHealth.html?utm_source=pediatric_ind&utm_medium=civ&utm_campaign=CDN_CHART
- OptiBac Probiotics. (n.d.). When should I not take probiotics? https://www.optibacprobiotics.com/learning-lab/about/probiotics/when-should-i-not-take-probiotics
- Canadian Digestive Health Foundation. (n.d.). A pharmacist’s guide to choosing the right probiotic. https://cdhf.ca/en/a-pharmacists-guide-to-choosing-the-right-probiotic/
- World Gastroenterology Organisation. (2023). Probiotics and prebiotics guideline. https://www.worldgastroenterology.org/UserFiles/file/guidelines/probiotics-and-prebiotics-english-2023.pdf
- Health Canada. (n.d.). Licensed Natural Health Products Database. Gouvernement du Canada. https://www.canada.ca/en/health-canada/services/drugs-health-products/natural-non-prescription/applications-submissions/product-licensing/licensed-natural-health-products-database.html